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Faculty of Science |
Structural Biology Tools
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Queries and comments are welcome.
Structural
Databases
Prediction Methods
PredictProtein Server- PredictProtein is a service for sequence analysis and structure prediction.Jpred - Predicts secondary structure from a protein sequence.
PSIPRED- a highly accurate method for protein secondary structure prediction, including MEMSAT - a transmembrane topology prediction method and GenTHREADER - a sequence profile based fold recognition method.
BioMolecular Engineering Research Center - Software to detect syntactic and semantic patterns in DNA, RNA, and protein sequences, and uses statistical/computational approaches to identify structure, function, and regulation in these molecules.
HUJI BioInformatics Server - Sequence analysis tools, Sequence alignment, Database searching, Evolution.
Viewers
Swissprot - Swiss-Prot is a curated protein sequence database with a high level of annotation (such as the description of the function of a protein, its domains structure, post-translational modifications, variants, etc.).MOLMOL - is a molecular graphics program for displaying, analyzing, and manipulating the three-dimensional structure of biological macromolecules, with special emphasis on the study of protein or DNA structures determined by NMR.
SwissPDB viewer- Swiss-PdbViewer is an application for analyzing several proteins at the same time to deduce structural alignments and compare their active sites or any other relevant parts (amino acid mutations, H-bonds, angles, distances between atoms).
Teaching Resources
Information Sources
Useful Links
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